Stem-loop lja-MIR11118

Accession

MI0035852

Description

Lotus japonicus lja-MIR11118 precursor miRNA

Sequence

829 reads, 123.0 reads per million, 8 experiments

ggugaaaggagaagguuggaagagagcgcugaaauggguuugaaaaaacccucugucguuuacaUACUAAUAGAAUACGGAAAAUUaaauuccguauucaauacggaagauaaauuucCGUAUUCUAUUAAAGGGGGGCuuuccaguaauuuccccacuu
((((...(((((...(((((...((((.((((...((((((....))))))....))..........((((((((((((((((.(((..((((((((...))))))))..))).))))))))))))))))....)).)))))))))...))))).)))).

Structure

-    aaa     agg     aga    g  gaaauggguuugaaaaaacccucugucguuuacaUAC                A   aa        u 
 ggug   ggaga   uugga   gagc cu                                     UAAUAGAAUACGGAAA UUa  uuccguau  
 ||||   |||||   |||||   |||| ||                                     |||||||||||||||| |||  |||||||| c
 ucac   ccuuu   gaccu   uuCG GG                                     AUUAUCUUAUGCcuuu aau  aaggcaua  
u    --c     aau     ---    G  ---------------------------------GGAA                a   ag        a 

Annotation confidence Low

Genome context

Chr4: 6492298-6492457 [+]

Mature lja-miR11118-5p

• Accession: MIMAT0043850
• Description: Lotus japonicus lja-miR11118-5p mature miRNA
• Sequence: 65 - UACUAAUAGAAUACGGAAAAUU - 86
• Evidence: experimental ; Illumina [1]

Mature lja-miR11118-3p

• Accession: MIMAT0043851
• Description: Lotus japonicus lja-miR11118-3p mature miRNA
• Sequence: 119 - CGUAUUCUAUUAAAGGGGGGC - 139
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256