Stem-loop lja-MIR11119

Accession

MI0035853

Description

Lotus japonicus lja-MIR11119 precursor miRNA

Sequence

2560 reads, 288.0 reads per million, 9 experiments

uuuuugugUUCGUAUCGUGACCUGUAUCGcacauaucgcaugaguaUCGCACGAUACGUAUCCCGAUAugauacaaaaa
.((((((((.(((((((.((..(((((((..(((((.......)))).)..)))))))..)).))))))))))))))).

Structure

u        U       U  CC       ca -    cg 
 uuuugugU CGUAUCG GA  UGUAUCG  c auau  c
 |||||||| ||||||| ||  |||||||  | ||||  a
 aaaacaua guAUAGC CU  GCAUAGC  G Uaug  u
a        -       C  AU       AC C    ag 

Annotation confidence Low

Genome context

Chr1: 52220998-52221076 [-]

Mature lja-miR11119-5p

• Accession: MIMAT0043852
• Description: Lotus japonicus lja-miR11119-5p mature miRNA
• Sequence: 9 - UUCGUAUCGUGACCUGUAUCG - 29
• Evidence: experimental ; Illumina [1]

Mature lja-miR11119-3p

• Accession: MIMAT0054676
• Description: Lotus japonicus lja-miR11119-3p mature miRNA
• Sequence: 47 - UCGCACGAUACGUAUCCCGAUA - 68
• Evidence: experimental ; unknown

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256