Stem-loop lja-MIR11103b

Accession

MI0035854

Description

Lotus japonicus lja-MIR11103b precursor miRNA

Sequence

1816 reads, 160.0 reads per million, 9 experiments

cucuccaguggauuuuccucaagUUUUCUCCAGUGGACAUUUGUggugguuuggaaccgccacaaaauguuggaagcugccacaaaaucugucaauuuuuugcagcacccuuuuguggcagcuucaaacauuuuguggcgguugcaaaccGCCACAAAAUUCCACUGGAGAAAucaugaggaaaauccaccggagag
((((((.((((((((((((((.(.(((((((((((((..((((((((((((((.(((((((((((((((((.(((((((((((((((.(((.(((....)))))).....))))))))))))))).))))))))))))))))).))))))))))))))..))))))))))))).).)))))))))))))).))))))

Structure

      a              a U             CA              g                 g               ----u   u   u 
cucucc guggauuuuccuca g UUUCUCCAGUGGA  UUUGUggugguuug aaccgccacaaaauguu gaagcugccacaaaa     cug caa u
|||||| |||||||||||||| | |||||||||||||  |||||||||||||| ||||||||||||||||| |||||||||||||||     ||| |||  
gagagg caccuaaaaggagu c AAAGAGGUCACCU  AAACACCGccaaac uuggcgguguuuuacaa cuucgacgguguuuu     gac guu u
      c              a u             UA              g                 a               cccac   -   u 

Annotation confidence Low

Genome context

Chr0: 26992647-26992843 [+]

Mature lja-miR11103b-5p

• Accession: MIMAT0043853
• Description: Lotus japonicus lja-miR11103b-5p mature miRNA
• Sequence: 24 - UUUUCUCCAGUGGACAUUUGU - 44
• Evidence: experimental ; Illumina [1]

Mature lja-miR11103b-3p

• Accession: MIMAT0054677
• Description: Lotus japonicus lja-miR11103b-3p mature miRNA
• Sequence: 151 - GCCACAAAAUUCCACUGGAGAAA - 173
• Evidence: experimental ; unknown

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256