Stem-loop lja-MIR11121

Accession

MI0035858

Description

Lotus japonicus lja-MIR11121 precursor miRNA

Sequence

807 reads, 106.0 reads per million, 9 experiments

uuucaaacuuuagggaguugaUUCUGUCGUUUUAAAUUUUUUCUgcaauuaaacgcacucuagaagugucugacacacgcacauuagaagugcgugacaaacgcacuuuuaaagugcgugcacuUUUAAGGGGGGUUUGUCACGCacuucuaaagugcguuaacuacgcacuuuuaaaauacguugaauuguagaaaaaauuuaaaacgauagaaucaacuccauaauguuugaaa
.(((((((.(((.(((((((((((((((((((((((((((((((((((((.((((.....(((((((((.......((((((.(((((((((((((((((((.(.((((.((((((....)))))).)))).).))))))))))))))))))).)))))).......))))))))).....)))).))))))))))))))))))))))))))))))))))))).))).))))))).

Structure

u       u   g                                     a    cacuc         cugacac      a                   g a    u      c 
 uucaaac uua ggaguugaUUCUGUCGUUUUAAAUUUUUUCUgcaauu aacg     uagaagugu       acgcac uuagaagugcgugacaaac c cuuu aaagug g
 ||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||     |||||||||       |||||| ||||||||||||||||||| | |||| ||||||  
 aaguuug aau ccucaacuaagauagcaaaauuuaaaaaagauguuaa uugc     auuuucacg       ugcgug aaucuucaCGCACUGUUUG G GGAA UUucac u
a       u   a                                     g    auaaa         caucaau      a                   G G    U      g 

Annotation confidence Low

Genome context

Chr0: 29295422-29295657 [+]

Mature lja-miR11121-5p

• Accession: MIMAT0054678
• Description: Lotus japonicus lja-miR11121-5p mature miRNA
• Sequence: 22 - UUCUGUCGUUUUAAAUUUUUUCU - 44
• Evidence: experimental ; unknown

Mature lja-miR11121-3p

• Accession: MIMAT0043860
• Description: Lotus japonicus lja-miR11121-3p mature miRNA
• Sequence: 125 - UUUAAGGGGGGUUUGUCACGC - 145
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256