Stem-loop lja-MIR5287a

Accession

MI0035860

Description

Lotus japonicus lja-MIR5287a precursor miRNA

Sequence

1540 reads, 174.0 reads per million, 9 experiments

uuuacaacaaaagauauacacccUCCGGUCAUUAUUAUAAGCAAaaaacaacauuuuaaauucauugaauaaaugauguauuuagucauuauuauagacuagauacaucauuuauugaaugaauuuaaaaacuuauuuuUUUGCUUAUAAUAGUGACCGGAugacguauauuaaauauguaaa
.(((((......(((((((..(.(((((((((((((((((((((((((.....(((((((((((((.((((((((((((((((((((.........)))))))))))))))))))).)))))))))))))......))))))))))))))))))))))))).)..))))))).....))))).

Structure

u     acaaaa       ac c                         -caaca             g                    auu 
 uuaca      gauauac  c UCCGGUCAUUAUUAUAAGCAAaaaa      uuuuaaauucauu aauaaaugauguauuuaguc   a
 |||||      |||||||  | |||||||||||||||||||||||||      ||||||||||||| ||||||||||||||||||||   u
 aaugu      uuauaug  g AGGCCAGUGAUAAUAUUCGUUUuuu      aaaauuuaaguaa uuauuuacuacauagaucag   u
a     -auaaa       ca u                         uauuca             g                    aua 

Annotation confidence Low

Genome context

Chr0: 12241310-12241492 [+]

Mature lja-miR5287a-5p

• Accession: MIMAT0054679
• Description: Lotus japonicus lja-miR5287a-5p mature miRNA
• Sequence: 24 - UCCGGUCAUUAUUAUAAGCAA - 44
• Evidence: experimental ; unknown

Mature lja-miR5287a-3p

• Accession: MIMAT0043862
• Description: Lotus japonicus lja-miR5287a-3p mature miRNA
• Sequence: 140 - UUUGCUUAUAAUAGUGACCGGA - 161
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256