Stem-loop lja-MIR11124

Accession

MI0035862

Description

Lotus japonicus lja-MIR11124 precursor miRNA

Sequence

ugagcuuggaauuaauuuuuaUCUCGUCUGCAUUUUGUGGAUGauucuucuguugaguguuuguaauuuguucacacuccaaggauaugaUCCCAUGAUGACAGAUGAGAUAagaaauuuuuccacggcuaca
..(((((((((..(.(((((((((((((((((((.((.((((.((..((((...((((((.............))))))..)))).)).)))))).)))).))))))))))))))).)..))))).))))...

Structure

-ug    -     uu a               -    U  U    G  uc    guu      uugua 
   agcu uggaa  a uuuuuaUCUCGUCUG CAUU UG GGAU au  uucu   gagugu     a
   |||| |||||  | ||||||||||||||| |||| || |||| ||  ||||   ||||||     u
   ucgg accuu  u aagaAUAGAGUAGAC GUAG AC CCUa ua  agga   cucaca     u
aca    c     uu a               A    U  -    g  -u    -ac      cuugu 

Annotation confidence Not enough data

Genome context

Chr1: 38467201-38467333 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from lja-MIR11124

Mature lja-miR11124-5p

• Accession: MIMAT0043865
• Description: Lotus japonicus lja-miR11124-5p mature miRNA
• Sequence: 22 - UCUCGUCUGCAUUUUGUGGAUG - 43
• Evidence: experimental ; Illumina [1]

Mature lja-miR11124-3p

• Accession: MIMAT0043866
• Description: Lotus japonicus lja-miR11124-3p mature miRNA
• Sequence: 91 - UCCCAUGAUGACAGAUGAGAUA - 112
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256