Stem-loop lja-MIR11088b

Accession

MI0035863

Description

Lotus japonicus lja-MIR11088b precursor miRNA

Sequence

1172 reads, 192.0 reads per million, 9 experiments

uccgccAAAAUAUGGGUUGGGUUGAGacuuugaaccaaaaugccaaaaaugggugagcCCAACCCAACCCGUAUUUUGGuggg
.(((((((((((((((((((((((.(.(((....(((............)))..)))).))))))))))))))))))))))).

Structure

u                       A a   ugaa   aaaug 
 ccgccAAAAUAUGGGUUGGGUUG G cuu    cca     c
 ||||||||||||||||||||||| | |||    |||      
 gguGGUUUUAUGCCCAACCCAAC c gag    ggu     c
g                       C -   --ug   aaaaa 

Annotation confidence Low

Genome context

Chr3: 2480774-2480856 [-]

Mature lja-miR11088b-5p

• Accession: MIMAT0043867
• Description: Lotus japonicus lja-miR11088b-5p mature miRNA
• Sequence: 7 - AAAAUAUGGGUUGGGUUGAG - 26
• Evidence: experimental ; Illumina [1]

Mature lja-miR11088b-3p

• Accession: MIMAT0054680
• Description: Lotus japonicus lja-miR11088b-3p mature miRNA
• Sequence: 59 - CCAACCCAACCCGUAUUUUGG - 79
• Evidence: experimental ; unknown

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256