Stem-loop lja-MIR11108h

Accession

MI0035865

Description

Lotus japonicus lja-MIR11108h precursor miRNA

Sequence

3972 reads, 812.0 reads per million, 9 experiments

guuaaauaacucaucaucuaaucacauuggagauaaaUGAGUUGGAAAUAAAUUAAUAAAUaaaauauauaaauuUCAACUCACUUAUCUCCAAUguaacuggauaaugaguuauuuaac
((((((((((((((.(((((...(((((((((((((.((((((((((..........................)))))))))).)))))))))))))...))))).))))))))))))))

Structure

              c     auc             a          AUAAAUUAAUAA 
guuaaauaacucau aucua   acauuggagauaa UGAGUUGGAA            A
|||||||||||||| |||||   ||||||||||||| ||||||||||             
caauuuauugagua uaggu   ugUAACCUCUAUU ACUCAACUuu            U
              a     caa             C          aaauauauaaaa 

Annotation confidence Low

Genome context

Chr5: 5188326-5188445 [+]

Mature lja-miR11108h-5p

• Accession: MIMAT0043869
• Description: Lotus japonicus lja-miR11108h-5p mature miRNA
• Sequence: 38 - UGAGUUGGAAAUAAAUUAAUAAAU - 61
• Evidence: experimental ; Illumina [1]

Mature lja-miR11108h-3p

• Accession: MIMAT0054681
• Description: Lotus japonicus lja-miR11108h-3p mature miRNA
• Sequence: 76 - UCAACUCACUUAUCUCCAAU - 95
• Evidence: experimental ; unknown

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256