Stem-loop lja-MIR11108k

Accession

MI0035866

Description

Lotus japonicus lja-MIR11108k precursor miRNA

Sequence

2855 reads, 601.0 reads per million, 9 experiments

uucuuagucuaaucacauuggagauaagUGAGUUGGAAAUAAAUUAAUAAAUaaaauauagaaauuucuacucacuuaucUUCAAUGUGAUUAGAUGAUgag
.((...(((((((((((((((((((((((((((.((((((.......................)))))))))))))))))))))))))))))))))...)).

Structure

u  uua                           U      AAAUUAAUAA 
 uc   gucuaaucacauuggagauaagUGAGU GGAAAU          A
 ||   ||||||||||||||||||||||||||| ||||||          U
 ag   UAGAUUAGUGUAACUUcuauucacuca ucuuua          a
g  UAG                           -      aagauauaaa 

Annotation confidence Low

Genome context

Chr2: 19151808-19151909 [+]

Mature lja-miR11108k-5p

• Accession: MIMAT0043870
• Description: Lotus japonicus lja-miR11108k-5p mature miRNA
• Sequence: 29 - UGAGUUGGAAAUAAAUUAAUAAAU - 52
• Evidence: experimental ; Illumina [1]

Mature lja-miR11108k-3p

• Accession: MIMAT0043871
• Description: Lotus japonicus lja-miR11108k-3p mature miRNA
• Sequence: 81 - UUCAAUGUGAUUAGAUGAU - 99
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256