Stem-loop lja-MIR11097d

Accession

MI0035869

Description

Lotus japonicus lja-MIR11097d precursor miRNA

Sequence

5971 reads, 933.0 reads per million, 9 experiments

caaaaguuauggcuuauuaaaaagaguUUAAUGGAUAUGCACUGUCAGUGUaaaacaguuuuacacugacaaccaaucacaacaugccauauaagugaaauaauaucuuucaucuuaaauuuuaauuaaaacaagaauauauuugcugauguggcagaauucaaUUGGGCGACUGUGUAAACAAAGUUuacacugacaguguauacccauuaaauucuauuaaaaauaagaagacuaaug
....((((....((((((.((.((((((((((((.(((((((((((((((((((.....(((((((......(((((.......((((((((.(((.(((((...((((.......................))))...)))))))).)))))))).......)))))......))))))).....))))))))))))))))))).)))))))))))).))...))))))..))))....

Structure

caaa    augg      --a  a            A                   acagu       ugacaa     cacaaca        a   g     aua    ucaucuuaaa 
    aguu    cuuauu   aa agaguUUAAUGG UAUGCACUGUCAGUGUaaa     uuuacac      ccaau       ugccauau agu aaaua   ucuu          u
    ||||    ||||||   || |||||||||||| |||||||||||||||||||     |||||||      |||||       |||||||| ||| |||||   ||||          u
    ucag    gaauaa   uu ucuuaaauuacc auaugugacagucacauUU     AAAUGUG      GGUUa       acggugua ucg uuuau   agaa          u
guaa    --aa      aaa  a            c                   GAAAC       UCAGCG     acuuaag        g   -     aua    caaaauuaau 

Annotation confidence Low

Genome context

Chr0: 11832816-11833055 [+]

Mature lja-miR11097d-5p

• Accession: MIMAT0043874
• Description: Lotus japonicus lja-miR11097d-5p mature miRNA
• Sequence: 28 - UUAAUGGAUAUGCACUGUCAGUGU - 51
• Evidence: experimental ; Illumina [1]

Mature lja-miR11097d-3p

• Accession: MIMAT0054682
• Description: Lotus japonicus lja-miR11097d-3p mature miRNA
• Sequence: 165 - UUGGGCGACUGUGUAAACAAAGUU - 188
• Evidence: experimental ; unknown

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256