Stem-loop lja-MIR11108s

Accession

MI0035870

Description

Lotus japonicus lja-MIR11108s precursor miRNA

Sequence

2691 reads, 572.0 reads per million, 9 experiments

ugagaaaguuuggguuaaauaaccuaucauucaaucacauugaagauaagUGAGUUGGAAAUAAAUUAAUAAAUaaaauauagaaauuccaacucacugaucuucaaugugAUUUGAUGAUGAGUUAUUUAAuccaaacuuuauca
(((.(((((((((((((((((((.(((((((.(((((((((((((((.((((((((((((..........................)))))))))))).))))))))))))))).))))))).))))))))))))))))))).)))

Structure

   g                   c       c               a            AUAAAUUAAUAA 
uga aaaguuuggguuaaauaac uaucauu aaucacauugaagau agUGAGUUGGAA            A
||| ||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||             
acu uuucaaaccuAAUUUAUUG GUAGUAG UUAguguaacuucua ucacucaaccuu            U
   a                   A       U               g            aaagauauaaaa 

Annotation confidence Low

Genome context

Chr2: 14314177-14314322 [-]

Mature lja-miR11108s-5p

• Accession: MIMAT0043875
• Description: Lotus japonicus lja-miR11108s-5p mature miRNA
• Sequence: 51 - UGAGUUGGAAAUAAAUUAAUAAAU - 74
• Evidence: experimental ; Illumina [1]

Mature lja-miR11108s-3p

• Accession: MIMAT0043876
• Description: Lotus japonicus lja-miR11108s-3p mature miRNA
• Sequence: 112 - AUUUGAUGAUGAGUUAUUUAA - 132
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256