Stem-loop lja-MIR11126

Accession

MI0035871

Description

Lotus japonicus lja-MIR11126 precursor miRNA

Sequence

acuuuuguuuuucucagccaaagaaaaauauuauuacuagUGUUCUGGGGACCCUGACCGGGgaCGGACAGGGGACCUAGGACAGGgcuggacccaccaaaagu
(((((((....((.(((((.....................(((((((((..(((((.(((....))).)))))..))))))))).))))))).....)))))))

Structure

       -uuuu  u     aaagaaaaauauuauuacuag         GA     A   G 
acuuuug     uc cagcc                     UGUUCUGGG  CCCUG CCG G
|||||||     || |||||                     |||||||||  ||||| |||  
ugaaaac     ag gucgG                     ACAGGAUCC  GGGAC GGC g
       caccc  -     --------------------G         AG     A   a 

Annotation confidence Not enough data

Genome context

Chr5: 3615816-3615919 [+]

Mature lja-miR11126-5p

• Accession: MIMAT0043877
• Description: Lotus japonicus lja-miR11126-5p mature miRNA
• Sequence: 41 - UGUUCUGGGGACCCUGACCGGG - 62
• Evidence: experimental ; Illumina [1]

Mature lja-miR11126-3p

• Accession: MIMAT0043878
• Description: Lotus japonicus lja-miR11126-3p mature miRNA
• Sequence: 65 - CGGACAGGGGACCUAGGACAGG - 86
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256