Stem-loop lja-MIR11097b

Accession

MI0035872

Description

Lotus japonicus lja-MIR11097b precursor miRNA

Sequence

3323 reads, 404.0 reads per million, 9 experiments

auuaguauaagAGAUUAAUUUCUAUGCACugacgguguaaaacuuauuuacaccgUCGGUGCAUAGAAAUUAAUCUcuuaguauaau
((((...((((((((((((((((((((((((((((((((((.....))))))))))))))))))))))))))))))))))...))))

Structure

    gua                                  a 
auua   uaagAGAUUAAUUUCUAUGCACugacgguguaaa c
||||   |||||||||||||||||||||||||||||||||| u
uaau   auucUCUAAUUAAAGAUACGUGGCUgccacauuu u
    aug                                  a 

Annotation confidence Medium

Genome context

Chr1: 62434349-62434435 [+]

Mature lja-miR11097b-5p

• Accession: MIMAT0054683
• Description: Lotus japonicus lja-miR11097b-5p mature miRNA
• Sequence: 12 - AGAUUAAUUUCUAUGCAC - 29
• Evidence: experimental ; unknown

Mature lja-miR11097b-3p

• Accession: MIMAT0043879
• Description: Lotus japonicus lja-miR11097b-3p mature miRNA
• Sequence: 56 - UCGGUGCAUAGAAAUUAAUCU - 76
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256