Stem-loop lja-MIR11127

Accession

MI0035873

Description

Lotus japonicus lja-MIR11127 precursor miRNA

Sequence

1100 reads, 173.0 reads per million, 8 experiments

cgguuaaaauuuuccuuucacagcggUUCGGACCCGCUGUAGAGCUCGCCGuuguaaaagacuauacagcggUCCGAACCGCUGUAAAAGAUAGAUuauuuaccg
((((...(((((..((((.(((((((((((((((.((((((.((.((............)))).))))))))))))))))))))).))))..)))))....))))

Structure

    -uaa     uc    c               C      G  C  GCCGu 
cggu    aauuu  cuuu acagcggUUCGGACC GCUGUA AG UC     u
||||    |||||  |||| ||||||||||||||| |||||| || ||      
gcca    uUAGA  GAAA UGUCGCCAAGCCUgg cgacau uc ag     g
    uuua     UA    A               -      a  -  aaaau 

Annotation confidence Low

Genome context

Chr4: 13560451-13560555 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from lja-MIR11127

Mature lja-miR11127-5p

• Accession: MIMAT0043880
• Description: Lotus japonicus lja-miR11127-5p mature miRNA
• Sequence: 27 - UUCGGACCCGCUGUAGAGCUCGCCG - 51
• Evidence: experimental ; Illumina [1]

Mature lja-miR11127-3p

• Accession: MIMAT0054684
• Description: Lotus japonicus lja-miR11127-3p mature miRNA
• Sequence: 73 - UCCGAACCGCUGUAAAAGAUAGAU - 96
• Evidence: experimental ; unknown

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256