Stem-loop lja-MIR11068f

Accession

MI0035874

Description

Lotus japonicus lja-MIR11068f precursor miRNA

Sequence

21397 reads, 1997.0 reads per million, 9 experiments

cucuauaAGAGCAUCUCCAAUGUAAGGUUCUuaauucuuauuuaugaguuAAGAACUAAGAACUUUACCAUUGGagguucugacauggag
((((((...((.(((((((((((((((((((((.((((((.........)))))).))))))))))).)))))))))).))...))))))

Structure

      aAG  C          -           a      uuu 
cucuau   AG AUCUCCAAUG UAAGGUUCUua uucuua   a
||||||   || |||||||||| ||||||||||| ||||||   u
gaggua   uc uggaGGUUAC AUUUCAAGAAU AAGAAu   g
      cag  u          C           C      uga 

Annotation confidence Low

Genome context

Chr5: 4972737-4972826 [+]

Mature lja-miR11068f-5p

• Accession: MIMAT0054685
• Description: Lotus japonicus lja-miR11068f-5p mature miRNA
• Sequence: 8 - AGAGCAUCUCCAAUGUAAGGUUCU - 31
• Evidence: experimental ; unknown

Mature lja-miR11068f-3p

• Accession: MIMAT0043881
• Description: Lotus japonicus lja-miR11068f-3p mature miRNA
• Sequence: 51 - AAGAACUAAGAACUUUACCAUUGG - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256