Stem-loop lja-MIR11128

Accession

MI0035875

Description

Lotus japonicus lja-MIR11128 precursor miRNA

Sequence

833 reads, 74.0 reads per million, 9 experiments

cacagugccuuggaaucaauuuuacugucuuugaguggucagcggcuggaauuAUUAUUGGCUUUGGUGUUACCCuaguguuuuuuucuuauacaaauuucuucuuugaaaacuaaaaaagaaagcacuaggguaacaccaaaggcaauaauaauuucaguugcugaccacucaaagacaguaaaAUUGAUUCCAAGGCACUGUG
((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((.((((((((((((((((((((((((((..........((((......)))).......)))))))))))))))))))))))))).))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))

Structure

                                                            G                          cuuauacaaa    uu 
cacagugccuuggaaucaauuuuacugucuuugaguggucagcggcuggaauuAUUAUUG CUUUGGUGUUACCCuaguguuuuuuu          uuuc  c
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||          ||||   
GUGUCACGGAACCUUAGUUAaaaugacagaaacucaccagucguugacuuuaauaauaac gaaaccacaaugggaucacgaaagaa          aaag  u
                                                            g                          ---aaaauca    uu 

Annotation confidence Low

Genome context

Chr4: 34177869-34178073 [+]

Mature lja-miR11128-5p

• Accession: MIMAT0043882
• Description: Lotus japonicus lja-miR11128-5p mature miRNA
• Sequence: 54 - AUUAUUGGCUUUGGUGUUACCC - 75
• Evidence: experimental ; Illumina [1]

Mature lja-miR11128-3p

• Accession: MIMAT0043883
• Description: Lotus japonicus lja-miR11128-3p mature miRNA
• Sequence: 186 - AUUGAUUCCAAGGCACUGUG - 205
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256