Stem-loop lja-MIR11108d

Accession

MI0035877

Description

Lotus japonicus lja-MIR11108d precursor miRNA

Sequence

11270 reads, 1700.0 reads per million, 9 experiments

gggguugucuaaaugacccaugauaaaguuugaguuaaauaacccaucauccaaucauauuggagauaaaUGAGUUGGAAAUAAAUUAAUAAAUaaaauauagaaauuccaacucacuuauuuccaaugUGAUUGGAUGAUGGGUUAUUUaauccaaacuuuaucaugggucauuuagacaacccc
((((((((((((((((((((((((((((((((.((((((((((((((((((((((((((((((((((((.((((((((((..........................)))))))))).)))))))))))))))))))))))))))))))))))).))))))))))))))))))))))))))))))))

Structure

                                a                                    a          AUAAAUUAAUAA 
gggguugucuaaaugacccaugauaaaguuug guuaaauaacccaucauccaaucauauuggagauaa UGAGUUGGAA            A
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||             
ccccaacagauuuacuggguacuauuucaaac uaaUUUAUUGGGUAGUAGGUUAGUguaaccuuuauu acucaaccuu            U
                                c                                    c          aaagauauaaaa 

Annotation confidence Low

Genome context

Chr3: 39981682-39981867 [-]

Mature lja-miR11108d-5p

• Accession: MIMAT0043885
• Description: Lotus japonicus lja-miR11108d-5p mature miRNA
• Sequence: 71 - UGAGUUGGAAAUAAAUUAAUAAAU - 94
• Evidence: experimental ; Illumina [1]

Mature lja-miR11108d-3p

• Accession: MIMAT0043886
• Description: Lotus japonicus lja-miR11108d-3p mature miRNA
• Sequence: 130 - UGAUUGGAUGAUGGGUUAUUU - 150
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256