Stem-loop lja-MIR168

Accession

MI0035878

Description

Lotus japonicus lja-MIR168 precursor miRNA

Literature search

2 open access papers mention lja-MIR168
(2 sentences)

Sequence

317502 reads, 18206.0 reads per million, 9 experiments

gcuucgcggucucuaauUCGCUUGGUGCAGGUCGGGAAccgcugcugcuucugccguuuucgcgcguaaucacucaccggaggagcgguuaccgccgccgguuggaucggauCCCGCCUUGCAUCAACUGAAUcggaacccgccuugaagc
(((((((((..(((.(((((.((((((((((.(((((.((((....))(((.((((.....(((.((((((.(((.......))).)))))))))...)))).)))..)).))))).)))))))))).))))).)))..))))...)))))

Structure

     ---    uc   a     C          U     A  gcugcugc   u    uuuuc   c      a   ac 
gcuuc   gcgg  ucu auUCG UUGGUGCAGG CGGGA cc        uuc gccg     gcg guaauc cuc  c
|||||   ||||  ||| ||||| |||||||||| ||||| ||        ||| ||||     ||| |||||| |||  g
cgaag   cgcc  agg UAAGU AACUACGUUC GCCCu gg        agg uggc     cgc cauugg gag  g
     uuc    ca   c     C          C     a  ------cu   u    --cgc   -      c   ga 

Annotation confidence High

Genome context

Chr2: 25511662-25511812 [-]

Mature lja-miR168-5p

• Accession: MIMAT0043887
• Description: Lotus japonicus lja-miR168-5p mature miRNA
• Sequence: 18 - UCGCUUGGUGCAGGUCGGGAA - 38
• Evidence: experimental ; Illumina [1]

Mature lja-miR168-3p

• Accession: MIMAT0043888
• Description: Lotus japonicus lja-miR168-3p mature miRNA
• Sequence: 113 - CCCGCCUUGCAUCAACUGAAU - 133
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256