Stem-loop lja-MIR11130

Accession

MI0035879

Description

Lotus japonicus lja-MIR11130 precursor miRNA

Sequence

uucuucuauuugaaugugUGGUAAAUGAUACAUCUCCAAGaagcaucuccaagaagcaucuccaagacauacauacagaaauguuguaauauuuauagucaggaaaugcuucuucugagaaugcuucuUCUGGUGUCUCAUUUAGCCACAcuuuuggauuaaggagaa
.(((((((((((((.(((((((((((((.(((((...((((((((((((.(((((((((.(((..(((.((((.(((....))))))).........))).))).)))))))))..))).)))))))))..))))).)))))).))))))).)))))))..)))))).

Structure

u      --       u       -      U     UCC         -   -c         c   aa   --------a    u   g 
 ucuucu  auuugaa gugUGGU AAAUGA ACAUC   AAGaagcau cuc  aagaagcau ucc  gac         uaca aca a
 ||||||  ||||||| ||||||| |||||| |||||   ||||||||| |||  ||||||||| |||  |||         |||| |||  
 agagga  uagguuu cACACCG UUUACU UGUGG   Uucuucgua gag  uucuucgua agg  cug         augu ugu a
a      au       u       A      C     -UC         a   uc         a   -a   auauuuaua    -   a 

Annotation confidence Not enough data

Genome context

Chr4: 9315918-9316085 [+]

Mature lja-miR11130-5p

• Accession: MIMAT0043889
• Description: Lotus japonicus lja-miR11130-5p mature miRNA
• Sequence: 19 - UGGUAAAUGAUACAUCUCCAAG - 40
• Evidence: experimental ; Illumina [1]

Mature lja-miR11130-3p

• Accession: MIMAT0043890
• Description: Lotus japonicus lja-miR11130-3p mature miRNA
• Sequence: 129 - UCUGGUGUCUCAUUUAGCCACA - 150
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256