Stem-loop lja-MIR11108r

Accession

MI0035881

Description

Lotus japonicus lja-MIR11108r precursor miRNA

Sequence

6021 reads, 910.0 reads per million, 9 experiments

aaauaauccaucauccaaucacauuagagauaagUGAGUUGGAAAUAAAUUAAUAAAUaaaauauagaaauuucaacucacuuaucuucuaugUGAUUGGAUGAUGAGUUAUUUa
(((((((.((((((((((((((((..((((((((((((((((((..........................))))))))))))))))))..)))))))))))))))).))))))).

Structure

-       c                ua                  AUAAAUUAAUAA 
 aaauaau caucauccaaucacau  gagauaagUGAGUUGGAA            A
 ||||||| ||||||||||||||||  ||||||||||||||||||             
 UUUAUUG GUAGUAGGUUAGUgua  uucuauucacucaacuuu            U
a       A                uc                  aaagauauaaaa 

Annotation confidence Low

Genome context

Chr3: 35042708-35042822 [-]

Mature lja-miR11108r-5p

• Accession: MIMAT0043893
• Description: Lotus japonicus lja-miR11108r-5p mature miRNA
• Sequence: 35 - UGAGUUGGAAAUAAAUUAAUAAAU - 58
• Evidence: experimental ; Illumina [1]

Mature lja-miR11108r-3p

• Accession: MIMAT0043894
• Description: Lotus japonicus lja-miR11108r-3p mature miRNA
• Sequence: 94 - UGAUUGGAUGAUGAGUUAUUU - 114
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256