Stem-loop lja-MIR11134

Accession

MI0035884

Description

Lotus japonicus lja-MIR11134 precursor miRNA

Sequence

8161 reads, 409.0 reads per million, 9 experiments

aauuugguuuuggcuuAAGUUUACUCUUGAUGGUCAGAGAacaaaaaacucaaucacucaauacuuaaauuauaaauacaaauaugaaguugagagacaucauauuguauuucucauuuaaguauugagagaccaauuuuuuguuuUCUGAUCAUCUAGGGUAAACUUacaaaaauaucaaauu
((((((((.((....((((((((((((.((((((((((((((((((((.....((.((((((((((((((...((((((((.(((((.(((....))).)))))))))))))...)))))))))))))).))....)))))))))))))))))))).))))))))))))....)).))))))))

Structure

        u  ggcu            U                    cucaa  a              uau        a     a   g 
aauuuggu uu    uAAGUUUACUCU GAUGGUCAGAGAacaaaaaa     uc cucaauacuuaaau   aaauacaa uauga guu a
|||||||| ||    |||||||||||| ||||||||||||||||||||     || ||||||||||||||   |||||||| ||||| |||  
uuaaacua aa    aUUCAAAUGGGA CUACUAGUCUuuuguuuuuu     ag gaguuaugaauuua   uuuauguu auacu cag g
        u  aaac            U                    -aacc  a              cuc        -     a   a 

Annotation confidence High

Genome context

Chr1: 41057086-41057269 [+]

Mature lja-miR11134-5p

• Accession: MIMAT0043897
• Description: Lotus japonicus lja-miR11134-5p mature miRNA
• Sequence: 17 - AAGUUUACUCUUGAUGGUCAGAGA - 40
• Evidence: experimental ; Illumina [1]

Mature lja-miR11134-3p

• Accession: MIMAT0043898
• Description: Lotus japonicus lja-miR11134-3p mature miRNA
• Sequence: 147 - UCUGAUCAUCUAGGGUAAACUU - 168
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256