Stem-loop lja-MIR11108m

Accession

MI0035885

Description

Lotus japonicus lja-MIR11108m precursor miRNA

Sequence

1702 reads, 269.0 reads per million, 9 experiments

uuugaguuaaauaacucauuaucgaaucaaaUUGGAGAUAAGUGAGUUGAAAcuaaauuaauaaauaaaauauuaaaauuucaacucacuuaucucaaaugUGAUUGGAUGAUGAAUUAUUUAACccaaa
.(((.(((((((((.((((((((.(((((.(((.((((((((((((((((((.....((((((.......))))))..)))))))))))))))))).))).))))).)))))))).))))))))).))).

Structure

u   a         c        g     a   G                  cuaaa      aa 
 uug guuaaauaa ucauuauc aauca aUU GAGAUAAGUGAGUUGAAA     uuaaua  u
 ||| ||||||||| |||||||| ||||| ||| ||||||||||||||||||     ||||||  a
 aac CAAUUUAUU AGUAGUAG UUAGU uaa cucuauucacucaacuuu     aauuau  a
a   c         A        G     g   a                  ---aa      aa 

Annotation confidence Low

Genome context

Chr0: 5877090-5877219 [+]

Mature lja-miR11108m-5p

• Accession: MIMAT0054686
• Description: Lotus japonicus lja-miR11108m-5p mature miRNA
• Sequence: 32 - UUGGAGAUAAGUGAGUUGAAA - 52
• Evidence: experimental ; unknown

Mature lja-miR11108m-3p

• Accession: MIMAT0043899
• Description: Lotus japonicus lja-miR11108m-3p mature miRNA
• Sequence: 102 - UGAUUGGAUGAUGAAUUAUUUAAC - 125
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256