Stem-loop lja-MIR11108n

Accession

MI0035886

Description

Lotus japonicus lja-MIR11108n precursor miRNA

Sequence

4615 reads, 655.0 reads per million, 9 experiments

uuuuaaaaugagguugucuaaaugacucAUGAUAAAGUUUGGGUUAAAUAAuccaucauccaaucacauuggaaauaagugaguuuuuaucuccaaugugauuggaugaugaauuauuuaacccaaacuUUAUCAUGGGUCAUUUAGACAACCucuuuuaaaa
.(((((((.(((((((((((((((((((((((((((((((((((((((((((.((((((((((((((((((((.(((((......))))).)))))))))))))))))))).)))))))))))))))))))))))))))))))))))))))))))))))))).

Structure

u       u                                           c                    a     ug 
 uuuaaaa gagguugucuaaaugacucAUGAUAAAGUUUGGGUUAAAUAAu caucauccaaucacauugga auaag  a
 ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||   
 aaauuuu cuCCAACAGAUUUACUGGGUACUAUUucaaacccaauuuauua guaguagguuaguguaaccu uauuu  g
a       -                                           a                    c     uu 

Annotation confidence Low

Genome context

Chr0: 15461879-15462041 [+]

Mature lja-miR11108n-5p

• Accession: MIMAT0043900
• Description: Lotus japonicus lja-miR11108n-5p mature miRNA
• Sequence: 29 - AUGAUAAAGUUUGGGUUAAAUAA - 51
• Evidence: experimental ; Illumina [1]

Mature lja-miR11108n-3p

• Accession: MIMAT0043901
• Description: Lotus japonicus lja-miR11108n-3p mature miRNA
• Sequence: 130 - UUAUCAUGGGUCAUUUAGACAACC - 153
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256