Stem-loop lja-MIR11108t

Accession

MI0035887

Description

Lotus japonicus lja-MIR11108t precursor miRNA

Sequence

3385 reads, 402.0 reads per million, 9 experiments

uaaaugacucAUGAUAAAGUUUGGGUUAAAUAACccaucauucaaucacaugggagauaagugaguugaaauuucuauauuuuauuuauuaauuuauuucuaacucauuUUGGAUGAUGGGUUAUUUAACCcaaacuuuauuaugggucauuua
(((((((((((((((((((((((((((((((((((((((((((((.......((((((((((.(((((((((......))))))...))).))))))))))........)))))))))))))))))))))))))))))))))))))))))))))

Structure

                                             -ucacaug          g   ---      uu 
uaaaugacucAUGAUAAAGUUUGGGUUAAAUAACccaucauucaa        ggagauaagu agu   ugaaau  c
|||||||||||||||||||||||||||||||||||||||||||||        |||||||||| |||   ||||||   
auuuacuggguauuauuucaaacCCAAUUUAUUGGGUAGUAGGUU        ucuuuauuua uua   auuuua  u
                                             uuacucaa          a   uuu      ua 

Annotation confidence Low

Genome context

Chr2: 13957721-13957874 [-]

Mature lja-miR11108t-5p

• Accession: MIMAT0054687
• Description: Lotus japonicus lja-miR11108t-5p mature miRNA
• Sequence: 11 - AUGAUAAAGUUUGGGUUAAAUAAC - 34
• Evidence: experimental ; unknown

Mature lja-miR11108t-3p

• Accession: MIMAT0043902
• Description: Lotus japonicus lja-miR11108t-3p mature miRNA
• Sequence: 110 - UUGGAUGAUGGGUUAUUUAACC - 131
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256