Stem-loop lja-MIR11108u

Accession

MI0035888

Description

Lotus japonicus lja-MIR11108u precursor miRNA

Sequence

1877 reads, 233.0 reads per million, 9 experiments

ugAGAAAGUUUGGGUUAAAUaauuuaucaucuaaucacauuaaagauaagugaguuagaaauaaauuaauaaauaaaauauagaaauuuaaacucacuuaucuucaaugucaUUGGAUGAUGGGUUAUUUAACCcaaacuuuuuca
(((((((((((((((((((((((((((((((((((.(((((.((((((((((((((.....((((((..((.........))..)))))))))))))))))))).))))).)))))))))))))))))))))))))))))))))))

Structure

                                   c     a              agaaa      aa  aau 
ugAGAAAGUUUGGGUUAAAUaauuuaucaucuaau acauu aagauaagugaguu     uaaauu  ua   a
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||     ||||||  ||   a
acuuuuucaaacCCAAUUUAUUGGGUAGUAGGUUa uguaa uucuauucacucaa     auuuaa  au   a
                                   c     c              -----      ag  aua 

Annotation confidence Low

Genome context

Chr4: 40660590-40660735 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from lja-MIR11108u

Mature lja-miR11108u-5p

• Accession: MIMAT0054688
• Description: Lotus japonicus lja-miR11108u-5p mature miRNA
• Sequence: 3 - AGAAAGUUUGGGUUAAAU - 20
• Evidence: experimental ; unknown

Mature lja-miR11108u-3p

• Accession: MIMAT0043903
• Description: Lotus japonicus lja-miR11108u-3p mature miRNA
• Sequence: 113 - UUGGAUGAUGGGUUAUUUAACC - 134
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256