Stem-loop lja-MIR11135a

Accession

MI0035889

Description

Lotus japonicus lja-MIR11135a precursor miRNA

Sequence

3423 reads, 388.0 reads per million, 9 experiments

uauaagcuuauacaauacauUAUGAGUUUAUCCAUUGUUUGGUaaugaCAUUGUAUUGUAUAAGCUUAUCca
.((((((((((((((((((..(((...(((.(((.....))))))...)))))))))))))))))))))...

Structure

--u                  uU   AGU   U   U 
   auaagcuuauacaauaca  AUG   UUA CCA U
   ||||||||||||||||||  |||   ||| ||| G
   UAUUCGAAUAUGUUAUGU  UAC   aaU GGU U
acC                  --   agu   -   U 

Annotation confidence Low

Genome context

Chr1: 20361993-20362064 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from lja-MIR11135a

Mature lja-miR11135a-5p

• Accession: MIMAT0054689
• Description: Lotus japonicus lja-miR11135a-5p mature miRNA
• Sequence: 21 - UAUGAGUUUAUCCAUUGUUUGGU - 43
• Evidence: experimental ; unknown

Mature lja-miR11135a-3p

• Accession: MIMAT0043904
• Description: Lotus japonicus lja-miR11135a-3p mature miRNA
• Sequence: 49 - CAUUGUAUUGUAUAAGCUUAUC - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256