Stem-loop lja-MIR11135b

Accession

MI0035890

Description

Lotus japonicus lja-MIR11135b precursor miRNA

Sequence

3696 reads, 391.0 reads per million, 9 experiments

ugauuGGAUAAGCUUAUACAAUACAuuaugugcuuauccauuguuuugugcaaacaUUGUAUUGUAUAAGCUUAUCCAUCa
((((.((((((((((((((((((((.....(((................))).....))))))))))))))))))))))))

Structure

    u                    uuaug   uuaucca 
ugau GGAUAAGCUUAUACAAUACA     ugc       u
|||| ||||||||||||||||||||     |||        
aCUA CCUAUUCGAAUAUGUUAUGU     acg       u
    -                    Uacaa   uguuuug 

Annotation confidence Medium

Genome context

Chr1: 11367161-11367241 [+]

Mature lja-miR11135b-5p

• Accession: MIMAT0054690
• Description: Lotus japonicus lja-miR11135b-5p mature miRNA
• Sequence: 6 - GGAUAAGCUUAUACAAUACA - 25
• Evidence: experimental ; unknown

Mature lja-miR11135b-3p

• Accession: MIMAT0043905
• Description: Lotus japonicus lja-miR11135b-3p mature miRNA
• Sequence: 57 - UUGUAUUGUAUAAGCUUAUCCAUC - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256