Stem-loop lja-MIR11136

Accession

MI0035892

Description

Lotus japonicus lja-MIR11136 precursor miRNA

Sequence

gaugcugaggacguugguugaaauacugaUUUGGAUCUUGAUAAUUGUUGGgauuuugaugacguugguugggaaaaugauuuggaucugGAUAAUUGUUGGGAUUUUGGUUguuauaugaguaguuagaugaauucuggguguu
((((((.(((..(((.(((....((((.((..(((((((((((((((((.((((((.(((..((((.........))))))).)))))).)))))))))))))))))..........)).))))....))).)))))).))))))

Structure

      g   ac   g   gaaa    g  --------UU                 G      u   ga    ggu 
gaugcu agg  guu guu    uacu aU          GGAUCUUGAUAAUUGUU Ggauuu gau  cguu   u
|||||| |||  ||| |||    |||| ||          ||||||||||||||||| |||||| |||  ||||   g
uugugg ucu  uaa uag    auga ua          UUUAGGGUUGUUAAUAG ucuagg uua  guaa   g
      g   --   g   auug    g  uauugUUGGU                 g      u   --    aag 

Annotation confidence Not enough data

Genome context

Chr0: 20905768-20905912 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from lja-MIR11136

Mature lja-miR11136-5p

• Accession: MIMAT0043907
• Description: Lotus japonicus lja-miR11136-5p mature miRNA
• Sequence: 30 - UUUGGAUCUUGAUAAUUGUUGG - 51
• Evidence: experimental ; Illumina [1]

Mature lja-miR11136-3p

• Accession: MIMAT0043908
• Description: Lotus japonicus lja-miR11136-3p mature miRNA
• Sequence: 91 - GAUAAUUGUUGGGAUUUUGGUU - 112
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256