Stem-loop lja-MIR11138

Accession

MI0035894

Description

Lotus japonicus lja-MIR11138 precursor miRNA

Sequence

3741 reads, 405.0 reads per million, 9 experiments

uaauAUAAAACCAUUAAAGUGACCCUUacccagcagcuuaagcuuuugggcugcagaaccaagucaaguaaccacuuuaucccaaaagcUUAAGCUGUUGGGUAAGGgucacuuuaaugguuuuauauua
((((((((((((((((((((((((((((((((((((((((((((((((((.((.((..................)).)).))))))))))))))))))))))))))))))))))))))))))))))))))

Structure

                                                  c  c  aaccaagu 
uaauAUAAAACCAUUAAAGUGACCCUUacccagcagcuuaagcuuuuggg ug ag        c
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||         
auuauauuuugguaauuucacugGGAAUGGGUUGUCGAAUUcgaaaaccc au uc        a
                                                  u  u  accaauga 

Annotation confidence Low

Genome context

Chr0: 2572935-2573064 [+]

Mature lja-miR11138-5p

• Accession: MIMAT0054692
• Description: Lotus japonicus lja-miR11138-5p mature miRNA
• Sequence: 5 - AUAAAACCAUUAAAGUGACCCUU - 27
• Evidence: experimental ; unknown

Mature lja-miR11138-3p

• Accession: MIMAT0043910
• Description: Lotus japonicus lja-miR11138-3p mature miRNA
• Sequence: 90 - UUAAGCUGUUGGGUAAGG - 107
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256