Stem-loop lja-MIR11140

Accession

MI0035897

Description

Lotus japonicus lja-MIR11140 precursor miRNA

Sequence

1660 reads, 193.0 reads per million, 9 experiments

caauuaugcgUUGGCUCAACAAGCGUGCgcuucgcacuacccuaacucguUUCCGAGCUUAACGCAUAAUugc
(((((((((((((((((...(((((((((...)))))...........))))..)))).))))))))))))).

Structure

-             -    AAC    -----------     c 
 caauuaugcgUUG GCUC   AAGC           GUGCg  
 ||||||||||||| ||||   ||||           ||||| u
 guUAAUACGCAAU CGAG   UUug           cacgc  
c             U    -CC    cucaaucccau     u 

Annotation confidence Low

Genome context

Chr0: 17555727-17555799 [+]

Mature lja-miR11140-5p

• Accession: MIMAT0043913
• Description: Lotus japonicus lja-miR11140-5p mature miRNA
• Sequence: 11 - UUGGCUCAACAAGCGUGC - 28
• Evidence: experimental ; Illumina [1]

Mature lja-miR11140-3p

• Accession: MIMAT0043914
• Description: Lotus japonicus lja-miR11140-3p mature miRNA
• Sequence: 51 - UUCCGAGCUUAACGCAUAAU - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256