Stem-loop lja-MIR11108x

Accession

MI0035898

Description

Lotus japonicus lja-MIR11108x precursor miRNA

Sequence

1456 reads, 225.0 reads per million, 9 experiments

guugaauaacauaucauccaaucaCAUUGAAGAUAAGUGAGUUGGAAUuuuuauauuuuauuuauuaauuuauuuucaacucacuuaucuccaauaugAUUGAAUGAUGAGUUAUUUAAC
((((((((((.((((((.((((((.((((.(((((((((((((((((.....(((..(((.....)))..)))))))))))))))))))).)))).)))))).)))))).))))))))))

Structure

          a      c      C    A                 Uuuuu   uu   u 
guugaauaac uaucau caauca AUUG AGAUAAGUGAGUUGGAA     aua  uua u
|||||||||| |||||| |||||| |||| |||||||||||||||||     |||  ||| u
CAAUUUAUUG GUAGUA GUUAgu uaac ucuauucacucaacuuu     uau  aau a
          A      A      a    c                 -----   uu   u 

Annotation confidence Low

Genome context

Chr4: 36789328-36789447 [+]

Mature lja-miR11108x-5p

• Accession: MIMAT0043915
• Description: Lotus japonicus lja-miR11108x-5p mature miRNA
• Sequence: 25 - CAUUGAAGAUAAGUGAGUUGGAAU - 48
• Evidence: experimental ; Illumina [1]

Mature lja-miR11108x-3p

• Accession: MIMAT0054694
• Description: Lotus japonicus lja-miR11108x-3p mature miRNA
• Sequence: 99 - AUUGAAUGAUGAGUUAUUUAAC - 120
• Evidence: experimental ; unknown

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256