Stem-loop lja-MIR11108q

Accession

MI0035899

Description

Lotus japonicus lja-MIR11108q precursor miRNA

Sequence

1978 reads, 260.0 reads per million, 9 experiments

uaaaugacucaugaugaaguuuggguuaaauaacucaucauucaauCACAUUGGAGAUAAGUGAGUUggaguugaaaauaaauuaauaaauaaaauauagaaauuucaacucacuuaucuuaaaugugauuggauuauguguuauuuaacccaaACUUUUCUUGGGUCAUUUA
(((((((((((.((.(((((((((((((((((((.(((.(((((((((((((.((((((((((((((((((((............................)))))))))))))))))))).))))))))))))).))).))))))))))))))))))))).)))))))))))

Structure

           u  u                   u   c             G                    gaaaauaaauuaa 
uaaaugacuca ga gaaguuuggguuaaauaac cau auucaauCACAUU GAGAUAAGUGAGUUggaguu             u
||||||||||| || ||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||              
AUUUACUGGGU CU UUUCAaacccaauuuauug gua uagguuaguguaa uucuauucacucaacuuuaa             a
           U  -                   u   u             a                    agauauaaaauaa 

Annotation confidence Low

Genome context

Chr4: 35313737-35313909 [-]

Mature lja-miR11108q-5p

• Accession: MIMAT0043916
• Description: Lotus japonicus lja-miR11108q-5p mature miRNA
• Sequence: 47 - CACAUUGGAGAUAAGUGAGUU - 67
• Evidence: experimental ; Illumina [1]

Mature lja-miR11108q-3p

• Accession: MIMAT0043917
• Description: Lotus japonicus lja-miR11108q-3p mature miRNA
• Sequence: 155 - ACUUUUCUUGGGUCAUUUA - 173
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256