miRBase entry: lja-MIR11141

Stem-loop lja-MIR11141


Accession
MI0035900
Description
Lotus japonicus lja-MIR11141 precursor miRNA


Sequence

2554 reads, 233.0 reads per million, 9 experiments
gcugggcUCAUUAAUUGACGUGACAagggccacgUCAGCUGGCGGAGCUCCGgc
(((((((((.(((.((((((((........)))))))).)))..)))).)))))

Structure
     -    -A   A        ACA 
gcugg gcUC  UUA UUGACGUG   a
||||| ||||  ||| ||||||||    
cgGCC CGAG  GGU GACUgcac   g
     U    GC   C        cgg 


Annotation confidence Low
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Genome context
Chr2: 30730742-30730795 [+]

Database links

Mature lja-miR11141-5p

Accession MIMAT0054695
Description Lotus japonicus lja-miR11141-5p mature miRNA
Sequence 8 - UCAUUAAUUGACGUGACA - 25
Evidence experimental
unknown

Mature lja-miR11141-3p

Accession MIMAT0043918
Description Lotus japonicus lja-miR11141-3p mature miRNA
Sequence 35 - UCAGCUGGCGGAGCUCCG - 52
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256