Stem-loop lja-MIR11142

Accession

MI0035901

Description

Lotus japonicus lja-MIR11142 precursor miRNA

Sequence

2731 reads, 252.0 reads per million, 8 experiments

ggcuuaaauguacuuuuggacccccaaguuuacauuuuuugcgauuuUUGACCCUGAUCUUAUUUUUCUACnaaaugagacccucucuaggcaauuugcaugcagaagauggcuggucuuuuugccuugagagggucucgauucggagaaaaauaagaucagggUCAACAAUCGCAAAAAAUGUAaacuugggggucuaaaagugcauuuaaguc
((((((((((((((((((((((((((((((((((((((((((((((.((((((((((((((((((((((......((((((((((((.((((((...((..((........))..))....)))))).))))))))))))......)))))))))))))))))))))).))))))))))))))))))))))))))))))))))))))))))))))

Structure

                                              u                      ACnaaa            u      -uuu  au  aga 
ggcuuaaauguacuuuuggacccccaaguuuacauuuuuugcgauu UUGACCCUGAUCUUAUUUUUCU      ugagacccucuc aggcaa    gc  gc   a
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||      |||||||||||| ||||||    ||  ||    
cugaauuuacgugaaaaucuggggguucaaAUGUAAAAAACGCUAA AACUgggacuagaauaaaaaga      gcucugggagag uccguu    ug  cg   g
                                              C                      ggcuua            u      uuuc  gu  gua 

Annotation confidence Low

Genome context

Unknown

Mature lja-miR11142-5p

• Accession: MIMAT0054696
• Description: Lotus japonicus lja-miR11142-5p mature miRNA
• Sequence: 48 - UUGACCCUGAUCUUAUUUUUCUAC - 71
• Evidence: experimental ; unknown

Mature lja-miR11142-3p

• Accession: MIMAT0043919
• Description: Lotus japonicus lja-miR11142-3p mature miRNA
• Sequence: 165 - UCAACAAUCGCAAAAAAUGUA - 185
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256