Stem-loop lja-MIR11090e

Accession

MI0035903

Description

Lotus japonicus lja-MIR11090e precursor miRNA

Sequence

1055 reads, 138.0 reads per million, 9 experiments

ggugaguguugaacacuuuAUAAGUGAGAGGACCCAUACACCCaaugccuuaaguuuugaguaaaagaugugguguccaaUCCACUUGUGGUGUGCUCuuauuaacc
(((.((((..((.(((.(((((((((.((((((((((((((.(((.((.....)).))).))....).))))).))))..))))))))))).))).)).)))).)))

Structure

   g    uu  a   u         A  --    -     - ----  C   u  c 
ggu agug  ga cac uuAUAAGUG GA  GGAC CCAUA C    AC Caa gc u
||| ||||  || ||| ||||||||| ||  |||| ||||| |    || ||| || u
cca uuau  CU GUG GGUGUUCAC CU  ccug ggugu g    ug guu ug a
   a    -u  C   U         -  aa    u     a aaaa  a   u  a 

Annotation confidence Low

Genome context

Chr1: 54169578-54169684 [-]

Mature lja-miR11090e-5p

• Accession: MIMAT0043922
• Description: Lotus japonicus lja-miR11090e-5p mature miRNA
• Sequence: 20 - AUAAGUGAGAGGACCCAUACACCC - 43
• Evidence: experimental ; Illumina [1]

Mature lja-miR11090e-3p

• Accession: MIMAT0054697
• Description: Lotus japonicus lja-miR11090e-3p mature miRNA
• Sequence: 81 - UCCACUUGUGGUGUGCUC - 98
• Evidence: experimental ; unknown

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256