Stem-loop lja-MIR11144

Accession

MI0035904

Description

Lotus japonicus lja-MIR11144 precursor miRNA

Sequence

2053 reads, 351.0 reads per million, 9 experiments

aguggugcAACCUUGCACCACUAUACCAAUUGuccauuuuaccccuguuaaaaaaauuauuuuauaaaaagaaaaaaauauugguauuaucggguggaUUUUGAUGGGAUUAAUUUUUUGAAcagggauaaaauggacaauuaacauaguggugcaaaguuacaccacu
(((((((.(((.((((((((((((...((((((((((((((.(((((((.(((((((((((((((.((((........((((.(......).))))..)))).)))))).))))))))).))))))).))))))))))))))...)))))))))))).))).)))))))

Structure

       c   C            ACC              c       a         -      a    gaaaaaaa    g ua 
aguggug AAC UUGCACCACUAU   AAUUGuccauuuua cccuguu aaaaaauua uuuuau aaaa        uauu g  u
||||||| ||| ||||||||||||   |||||||||||||| ||||||| ||||||||| |||||| ||||        |||| |   
ucaccac uug aacguggugaua   uuaacagguaaaau gggacAA UUUUUUAAU AGGGUA UUUU        gugg c  u
       a   a            caa              a       G         U      G    ------ag    g ua 

Annotation confidence Low

Genome context

Chr0: 19064529-19064697 [+]

Mature lja-miR11144-5p

• Accession: MIMAT0043923
• Description: Lotus japonicus lja-miR11144-5p mature miRNA
• Sequence: 9 - AACCUUGCACCACUAUACCAAUUG - 32
• Evidence: experimental ; Illumina [1]

Mature lja-miR11144-3p

• Accession: MIMAT0043924
• Description: Lotus japonicus lja-miR11144-3p mature miRNA
• Sequence: 99 - UUUUGAUGGGAUUAAUUUUUUGAA - 122
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256