Stem-loop lja-MIR11145a

Accession

MI0035906

Description

Lotus japonicus lja-MIR11145a precursor miRNA

Sequence

1370 reads, 196.0 reads per million, 8 experiments

aGGCUUAAUAGCUCUUUUGGUCCCucacuuauuauaauuuugcauuuuugguccccaauaaaaaaacuagcacuuuugguccuccacauugcuuaauuuuuuggaaaaaugaucccuauuucacuauuugggacuaaaauggcaaaaguguguaaauguaagggacuaauuaugcuaauuuuuuucuagagggaccaaaagugcaAAAUCGUGAUAAGUGAGGGACcaaaagagcuauuaagcuu
.((((((((((((((((((((((((((((((((((.((((((((((((((((((((...(((((((.(((((...((((((((..(((((.......((((((.........((((.............)))).........))))))......)))))..))))))))...))))).)))))))...).))))))))))))))))))).)))))))))))))))))))))))))))))))))).

Structure

a                                  a                   - aau       c     cuu        cc     gcuuaau      gaaaaauga    uauuu 
 GGCUUAAUAGCUCUUUUGGUCCCucacuuauuau auuuugcauuuuugguccc c   aaaaaaa uagca   uugguccu  acauu       uuuuug         uccc     c
 |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |   ||||||| |||||   ||||||||  |||||       ||||||         ||||     a
 ucgaauuaucgagaaaacCAGGGAGUGAAUAGUG UAAAacgugaaaaccaggg g   uuuuuuu aucgu   aaucaggg  uguaa       gaaaac         aggg     c
u                                  C                   a auc       a     auu        aa     -augugu      gguaaaauc    uuuau 

Annotation confidence Low

Genome context

Chr0: 25924671-25924915 [+]

Mature lja-miR11145a-5p

• Accession: MIMAT0054699
• Description: Lotus japonicus lja-miR11145a-5p mature miRNA
• Sequence: 2 - GGCUUAAUAGCUCUUUUGGUCCC - 24
• Evidence: experimental ; unknown

Mature lja-miR11145a-3p

• Accession: MIMAT0043926
• Description: Lotus japonicus lja-miR11145a-3p mature miRNA
• Sequence: 206 - AAAUCGUGAUAAGUGAGGGAC - 226
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256