Stem-loop lja-MIR11145c

Accession

MI0035908

Description

Lotus japonicus lja-MIR11145c precursor miRNA

Sequence

1012 reads, 126.0 reads per million, 8 experiments

aauagcuuuuuUGGUCCCUCACUUAUCACGguuuugcacuuuugaucccuaauaaaaaaauuagcacuuuugguccuccacauugcuuauuuauuugcaaaaaugaucccuauuuagacuaaaacugcaaaaguguguaaaugugagggacuaauuuugcuaauuuuuuucuaaagagaccaaaagagcaaaauuguGAUAAGUGAGGGACCAAAAGAGCUauu
(((((((((((((((((((((((((((((((((((((.((((((.((.((...(((((((((((((...((((((((.((((((((.(((((..(((((.......((........)).......)))))))))).)).)))))).))))))))...)))))))))))))....)).)).)))))).)))))))))))))))))))))))))))))))))))))

Structure

                                     a      a  c  -aau             cuu        c      -  u     au     aaaauga  ccu 
aauagcuuuuuUGGUCCCUCACUUAUCACGguuuugc cuuuug uc cu    aaaaaaauuagca   uugguccu cacauu gc uauuu  uugca       uc   a
||||||||||||||||||||||||||||||||||||| |||||| || ||    |||||||||||||   |||||||| |||||| || |||||  |||||       ||    
uuaUCGAGAAAACCAGGGAGUGAAUAGuguuaaaacg gaaaac ag ga    uuuuuuuaaucgu   aaucaggg guguaa ug gugaa  aacgu       ag   u
                                     a      c  a  aauc             uuu        a      a  u     --     caaaauc  auu 

Annotation confidence Low

Genome context

Chr3: 38745538-38745761 [+]

Mature lja-miR11145c-5p

• Accession: MIMAT0054701
• Description: Lotus japonicus lja-miR11145c-5p mature miRNA
• Sequence: 12 - UGGUCCCUCACUUAUCACG - 30
• Evidence: experimental ; unknown

Mature lja-miR11145c-3p

• Accession: MIMAT0043928
• Description: Lotus japonicus lja-miR11145c-3p mature miRNA
• Sequence: 198 - GAUAAGUGAGGGACCAAAAGAGCU - 221
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256