Stem-loop lja-MIR11146

Accession

MI0035909

Description

Lotus japonicus lja-MIR11146 precursor miRNA

Sequence

6794 reads, 642.0 reads per million, 9 experiments

aacuucaaaauuagcaaaaaaaacguccuccaacuauacauguuguugcacuuuuugucugccguuugucuuccgugagaaaacUAACGUGAGAAGCUGAUGUagcucccucacgcgugucucacggaaggcaaacgacagaccaaaagugcAACGACAUGUAUAGUUGGAGGAuguuuuuuacuaauuuugaaaguu
((((((((((((((...((((((((((((((((((((((((((((((((((((((.(((((.((((((((((((((((((..((...((((((.(((((...)))))..)))))).)).)))))))))))))))))).))))).)))))))))))))))))))))))))))))))))))))).))))))))).)))))

Structure

     -         caa                                      u     c                  aa  UAA      -A     A 
aacuu caaaauuag   aaaaaacguccuccaacuauacauguuguugcacuuuu gucug cguuugucuuccgugaga  ac   CGUGAG  AGCUG  
||||| |||||||||   |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||  ||   ||||||  ||||| U
uugaa guuuuaauc   uuuuuuguAGGAGGUUGAUAUGUACAGCAAcgugaaaa cagac gcaaacggaaggcacucu  ug   gcacuc  ucgaU  
     a         --a                                      c     a                  -g  --c      cc     G 

Annotation confidence Low

Genome context

Chr4: 19305221-19305418 [+]

Mature lja-miR11146-5p

• Accession: MIMAT0054702
• Description: Lotus japonicus lja-miR11146-5p mature miRNA
• Sequence: 85 - UAACGUGAGAAGCUGAUGU - 103
• Evidence: experimental ; unknown

Mature lja-miR11146-3p

• Accession: MIMAT0043929
• Description: Lotus japonicus lja-miR11146-3p mature miRNA
• Sequence: 153 - AACGACAUGUAUAGUUGGAGGA - 174
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256