Stem-loop lja-MIR11147

Accession

MI0035910

Description

Lotus japonicus lja-MIR11147 precursor miRNA

Sequence

2111 reads, 309.0 reads per million, 9 experiments

uuguuucauggauuggaaaAGGAUUCCCGGGAAUGUUUGGGCCggaaucuacauuccaguguuugguagcagauuuGAAAAAAAUAUUCCCGGGUAUCUUucauuccugggcaa
.((((.((.(((.((((...((((.(((((((((((((......((((((.....(((.....)))....)))))).....))))))))))))).)))))))).))))))))).

Structure

u    u  u   u    aaA    U             GGGCCg      acauu   g 
 uguu ca gga ugga   GGAU CCCGGGAAUGUUU      gaaucu     cca u
 |||| || ||| ||||   |||| |||||||||||||      ||||||     ||| g
 acgg gu ccu acuU   UCUA GGGCCCUUAUAAA      uuuaga     ggu u
a    -  -   u    ---    U             -AAAAG      -cgau   u 

Annotation confidence Low

Genome context

Chr2: 27279589-27279702 [+]

Mature lja-miR11147-5p

• Accession: MIMAT0043930
• Description: Lotus japonicus lja-miR11147-5p mature miRNA
• Sequence: 20 - AGGAUUCCCGGGAAUGUUUGGGCC - 43
• Evidence: experimental ; Illumina [1]

Mature lja-miR11147-3p

• Accession: MIMAT0054703
• Description: Lotus japonicus lja-miR11147-3p mature miRNA
• Sequence: 77 - GAAAAAAAUAUUCCCGGGUAUCUU - 100
• Evidence: experimental ; unknown

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256