miRBase entry: lja-MIR11083d

Stem-loop lja-MIR11083d


Accession
MI0035911
Description
Lotus japonicus lja-MIR11083d precursor miRNA


Sequence

augcaugguugcuuauuggguugcuuaaaugcuauucuggugggcccagacugccacaugGGAUUUAAGCAACUCAUAAGCAAcccaugcau
((((((((((((((((.(((((((((((((.((((..((((((.......)))))).)))).))))))))))))))))))))).))))))))

Structure
        -        u             g    uc      gc 
augcaugg uugcuuau ggguugcuuaaau cuau  uggugg  c
|||||||| |||||||| ||||||||||||| ||||  ||||||  c
uacguacc AACGAAUA CUCAACGAAUUUA Ggua  accguc  a
        c        -             G    -c      ag 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Chr0: 31595013-31595104 [+]

Database links

Mature lja-miR11083d-3p

Accession MIMAT0043931
Description Lotus japonicus lja-miR11083d-3p mature miRNA
Sequence 61 - GGAUUUAAGCAACUCAUAAGCAA - 83
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256