Stem-loop lja-MIR11083d

Accession

MI0035911

Description

Lotus japonicus lja-MIR11083d precursor miRNA

Sequence

1804 reads, 193.0 reads per million, 9 experiments

augcaugguugcuuauuggguugcUUAAAUGCUAUUCUGGUGGGCCcagacugccacaugggauUUAAGCAACUCAUAAGCAACCCAUgcau
((((((((((((((((.(((((((((((((.((((..((((((.......)))))).)))).))))))))))))))))))))).))))))))

Structure

        -        u             G    UC      GC 
augcaugg uugcuuau ggguugcUUAAAU CUAU  UGGUGG  C
|||||||| |||||||| ||||||||||||| ||||  ||||||  c
uacgUACC AACGAAUA CUCAACGAAUUua ggua  accguc  a
        C        -             g    -c      ag 

Annotation confidence Low

Genome context

Chr0: 31595013-31595104 [+]

Mature lja-miR11083d-5p

• Accession: MIMAT0054704
• Description: Lotus japonicus lja-miR11083d-5p mature miRNA
• Sequence: 25 - UUAAAUGCUAUUCUGGUGGGCC - 46
• Evidence: experimental ; unknown

Mature lja-miR11083d-3p

• Accession: MIMAT0043931
• Description: Lotus japonicus lja-miR11083d-3p mature miRNA
• Sequence: 65 - UUAAGCAACUCAUAAGCAACCCAU - 88
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256