Stem-loop lja-MIR11083e

Accession

MI0035912

Description

Lotus japonicus lja-MIR11083e precursor miRNA

Sequence

1565 reads, 167.0 reads per million, 9 experiments

augcaugguugcuuauuggguugcUUAAAUGCUAUUCUGGUGGGCCcagacugucacaugggauUUAAGCAACUCAUAAGCAACCCAUgcau
((((((((((((((((.(((((((((((((.(((((((((.....))))).......)))).))))))))))))))))))))).))))))))

Structure

        -        u             G    -------     U 
augcaugg uugcuuau ggguugcUUAAAU CUAU       UCUGG G
|||||||| |||||||| ||||||||||||| ||||       ||||| G
uacgUACC AACGAAUA CUCAACGAAUUua ggua       agacC G
        C        -             g    cacuguc     C 

Annotation confidence Low

Genome context

Chr1: 61764269-61764360 [-]

Mature lja-miR11083e-5p

• Accession: MIMAT0054705
• Description: Lotus japonicus lja-miR11083e-5p mature miRNA
• Sequence: 25 - UUAAAUGCUAUUCUGGUGGGCC - 46
• Evidence: experimental ; unknown

Mature lja-miR11083e-3p

• Accession: MIMAT0043932
• Description: Lotus japonicus lja-miR11083e-3p mature miRNA
• Sequence: 65 - UUAAGCAACUCAUAAGCAACCCAU - 88
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256