Stem-loop lja-MIR11148

Accession

MI0035914

Description

Lotus japonicus lja-MIR11148 precursor miRNA

Sequence

1392 reads, 207.0 reads per million, 9 experiments

aaauuaauuauaaacuaauaaaaugaAGAGUUGUGAUUGAAUGAUUGUauaaaacuuauuuacaccgucgguacauagaaauuaauuucaaucauaaucacaauuggguuauggauuaauuucuauucACUGACGGUGUAAAUAAGUuuuacacaauuauucaaucacaacccuucauuuuguuagcuuauaauuaauuu
(((((((((((((.((((((((((((((.(((((((((((((((((((.(((((((((((((((((((((((..(((((((((((((.....(((((((.......))))))))))))))))))))..))))))))))))))))))))))).))))))))))))))))))).)))))))))))))).)))))))))))))

Structure

             a              A                   a                       ac             ucaau       ac 
aaauuaauuauaa cuaauaaaaugaAG GUUGUGAUUGAAUGAUUGU uaaaacuuauuuacaccgucggu  auagaaauuaauu     cauaauc  a
||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||  |||||||||||||     |||||||  a
uuuaauuaauauu gauuguuuuacuuc caacacuaacuuauuaaca auuuUGAAUAAAUGUGGCAGUCA  uaucuuuaauuag     guauugg  u
             c              c                   c                       cu             -----       gu 

Annotation confidence Low

Genome context

Chr3: 13768945-13769144 [+]

Mature lja-miR11148-5p

• Accession: MIMAT0043934
• Description: Lotus japonicus lja-miR11148-5p mature miRNA
• Sequence: 27 - AGAGUUGUGAUUGAAUGAUUGU - 48
• Evidence: experimental ; Illumina [1]

Mature lja-miR11148-3p

• Accession: MIMAT0054707
• Description: Lotus japonicus lja-miR11148-3p mature miRNA
• Sequence: 129 - ACUGACGGUGUAAAUAAGU - 147
• Evidence: experimental ; unknown

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256