Stem-loop lja-MIR11108i

Accession

MI0035915

Description

Lotus japonicus lja-MIR11108i precursor miRNA

Sequence

7907 reads, 1020.0 reads per million, 9 experiments

ugaguugucUAAAUGACCCAUGAUAAAGUUUGgguuaaauaaucuaucaucaaaucacauuggagaucaaugaguuggaaauaaauucacaaauaaaauauagaaauuucaacucacuuaucuccaaugUGAUUGGAUGAUGGGUUAUUUaacccaaauuuuaucaugggucauuuagacaaccca
((.((((((((((((((((((((((((((((((((((((((((((((((((.(((((((((((((((...((((((((((..........................))))))))))...))))))))))))))).)))))))))))))))))))))))))))))))))))))))))))))))).))

Structure

  a                                                a               caa          auaaauucacaa 
ug guugucUAAAUGACCCAUGAUAAAGUUUGgguuaaauaaucuaucauc aaucacauuggagau   ugaguuggaa            a
|| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||   ||||||||||             
ac caacagauuuacuggguacuauuuuaaacccaaUUUAUUGGGUAGUAG UUAGUguaaccucua   acucaacuuu            u
  c                                                G               uuc          aaagauauaaaa 

Annotation confidence Low

Genome context

Chr4: 33382654-33382839 [+]

Mature lja-miR11108i-5p

• Accession: MIMAT0054708
• Description: Lotus japonicus lja-miR11108i-5p mature miRNA
• Sequence: 10 - UAAAUGACCCAUGAUAAAGUUUG - 32
• Evidence: experimental ; unknown

Mature lja-miR11108i-3p

• Accession: MIMAT0043935
• Description: Lotus japonicus lja-miR11108i-3p mature miRNA
• Sequence: 130 - UGAUUGGAUGAUGGGUUAUUU - 150
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256