Stem-loop lja-MIR11149a

Accession

MI0035916

Description

Lotus japonicus lja-MIR11149a precursor miRNA

Sequence

8001 reads, 791.0 reads per million, 9 experiments

uauacaccgauaauguaaauAAGUUUUACACCAUCAUUCAAucacaucucuccauuuuguuagcucauaauuaauuuuaaauuuaauaauaucuaaaauagaaaauggaaguuugugaUUGAAUGAUGGUGUAAAACUUuuuacaccgucggugcaua
....(((((((..((((((.((((((((((((((((((((((((((.((.((((((((.((((......(((((........))))).....)))....).))))))))))..))))))))))))))))))))))))))))))))..)))))))....

Structure

uaua       aa      u                          -u  c        g ----   cucaua     uuu 
    caccgau  uguaaa AAGUUUUACACCAUCAUUCAAucaca  cu uccauuuu u    uag      auuaa   u
    |||||||  |||||| ||||||||||||||||||||||||||  || |||||||| |    |||      |||||    
    guggcug  acauuu UUCAAAAUGUGGUAGUAAGUUagugu  ga agguaaaa a    auc      uaauu   a
auac       cc      -                          uu  -        g uaaa   -uauaa     uaa 

Annotation confidence Low

Genome context

Chr3: 19141989-19142146 [+]

Mature lja-miR11149a-5p

• Accession: MIMAT0043936
• Description: Lotus japonicus lja-miR11149a-5p mature miRNA
• Sequence: 21 - AAGUUUUACACCAUCAUUCAA - 41
• Evidence: experimental ; Illumina [1]

Mature lja-miR11149a-3p

• Accession: MIMAT0043937
• Description: Lotus japonicus lja-miR11149a-3p mature miRNA
• Sequence: 119 - UUGAAUGAUGGUGUAAAACUU - 139
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256