Stem-loop lja-MIR5287b

Accession

MI0035917

Description

Lotus japonicus lja-MIR5287b precursor miRNA

Sequence

670 reads, 86.0 reads per million, 9 experiments

agauuacacucuccaaucacauauauaaauaaaaaaacauauucuaaguucauucaUUUAAUGCAUGUACCUAGUuaauuaaaugaaugaaucuaaaacguauuuuuuugcuuauauAUGUGAUCGGAGGGUGUAUgaaucu
((((((((((((((.(((((((((((((.((((((((.((.((.((.(((((((((((((((...............))))))))))))))).)).)).)).)))))))).))))))))))))).))))))))))...))))

Structure

    ---          a             a        c  a  c  a               GCAUGU 
agau   uacacucucc aucacauauauaa uaaaaaaa au uu ua guucauucaUUUAAU      A
||||   |||||||||| ||||||||||||| |||||||| || || || |||||||||||||||      C
ucua   AUGUGGGAGG UAGUGUAuauauu guuuuuuu ug aa au uaaguaaguaaauua      C
    agU          C             c        a  c  a  c               auUGAU 

Annotation confidence Low

Genome context

Chr3: 42705178-42705319 [+]

Mature lja-miR5287b-5p

• Accession: MIMAT0054709
• Description: Lotus japonicus lja-miR5287b-5p mature miRNA
• Sequence: 57 - UUUAAUGCAUGUACCUAGU - 75
• Evidence: experimental ; unknown

Mature lja-miR5287b-3p

• Accession: MIMAT0043938
• Description: Lotus japonicus lja-miR5287b-3p mature miRNA
• Sequence: 118 - AUGUGAUCGGAGGGUGUAU - 136
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256