Stem-loop lja-MIR11108v

Accession

MI0035918

Description

Lotus japonicus lja-MIR11108v precursor miRNA

Sequence

8909 reads, 1190.0 reads per million, 9 experiments

uuuuaaggaggguugucuaaacaauccaugagaaaguuugagcuaaauAACUCAUCAUCUAAUCACAUUagaaauaagugaguuggaaauauauuaauaaauaaaauauagaaauucuagcucacucauuuucaaugUGAUUGGAUGAUGAGUUAUUUAACccaaacuuucacauagaucauuuagacaacucauuuuaagg
.(((((((.((((((((((((..(((.(((.(((((((((.(.((((((((((((((((((((((((((.(((((.((((((((((((.((((((.........))))))....)))))))))))).))))).)))))))))))))))))))))))))).).))))))))).))).)))..)))))))))))).))))))).

Structure

u       a            ca   c   a         a c                          a     a            ---a      aau 
 uuuaagg ggguugucuaaa  auc aug gaaaguuug g uaaauAACUCAUCAUCUAAUCACAUU gaaau agugaguuggaa    uauauu   a
 ||||||| ||||||||||||  ||| ||| ||||||||| | |||||||||||||||||||||||||| ||||| ||||||||||||    ||||||   a
 gaauuuu cucaacagauuu  uag uac cuuucaaac C AUUUAUUGAGUAGUAGGUUAGUguaa uuuua ucacucgaucuu    auauaa   a
g       a            ac   a   a         c A                          c     c            aaag      aau 

Annotation confidence Low

Genome context

Chr2: 28908884-28909085 [+]

Mature lja-miR11108v-5p

• Accession: MIMAT0054710
• Description: Lotus japonicus lja-miR11108v-5p mature miRNA
• Sequence: 49 - AACUCAUCAUCUAAUCACAUU - 69
• Evidence: experimental ; unknown

Mature lja-miR11108v-3p

• Accession: MIMAT0043939
• Description: Lotus japonicus lja-miR11108v-3p mature miRNA
• Sequence: 138 - UGAUUGGAUGAUGAGUUAUUUAAC - 161
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256