Stem-loop lja-MIR11108f

Accession

MI0035919

Description

Lotus japonicus lja-MIR11108f precursor miRNA

Sequence

2002 reads, 249.0 reads per million, 9 experiments

gaccuaugauaaaguuugaguuaaauaacccaccauccAAUCACAUUGGAGAUAAAUGAGUUguaaauaaauuaauaaauaaaauauagaaauuucaacucacuuaucuccaauguggUUGGAUGGUGGGUUAUUUAACCcaaacuuuaucauggguc
((((((((((((((((((.((((((((((((((((((((((((((((((((((((.(((((((.((((.......................))))))))))).)))))))))))))))))))))))))))))))))))).))))))))))))))))))

Structure

                  a                                    A       u    aaauuaauaa 
gaccuaugauaaaguuug guuaaauaacccaccauccAAUCACAUUGGAGAUAA UGAGUUg aaau          a
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||          u
cuggguacuauuucaaac CAAUUUAUUGGGUGGUAGGUUgguguaaccucuauu acucaac uuua          a
                  C                                    c       -    aagauauaaa 

Annotation confidence Low

Genome context

Chr1: 11852693-11852850 [+]

Mature lja-miR11108f-5p

• Accession: MIMAT0043940
• Description: Lotus japonicus lja-miR11108f-5p mature miRNA
• Sequence: 39 - AAUCACAUUGGAGAUAAAUGAGUU - 62
• Evidence: experimental ; Illumina [1]

Mature lja-miR11108f-3p

• Accession: MIMAT0043941
• Description: Lotus japonicus lja-miR11108f-3p mature miRNA
• Sequence: 119 - UUGGAUGGUGGGUUAUUUAACC - 140
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256