Stem-loop lja-MIR395

Accession

MI0035921

Description

Lotus japonicus lja-MIR395 precursor miRNA

Literature search

2 open access papers mention lja-MIR395
(7 sentences)

Sequence

408 reads, 97.0 reads per million, 8 experiments

ggugauuccgagaguucccccaaacacuucAAUAAGGACGAAGAAAAACUGAGUccuuAAUGAACUGUUGAGGGGAACUCUAGgagcacc
((((.((((.((((((((((..((((.((((.(((((((..((.....))..))))))).)))).))))..)))))))))).))))))))

Structure

    a    g          ca    c    A       GA  A 
ggug uucc agaguucccc  aaca uucA UAAGGAC  AG A
|||| |||| ||||||||||  |||| |||| |||||||  || A
ccac gagG UCUCAAGGGG  UUGU AAGU AuuccUG  UC A
    -    A          AG    C    A       AG  A 

Annotation confidence Low

Genome context

Chr2: 21280798-21280887 [+]

Mature lja-miR395-5p

• Accession: MIMAT0054712
• Description: Lotus japonicus lja-miR395-5p mature miRNA
• Sequence: 31 - AAUAAGGACGAAGAAAAACUGAGU - 54
• Evidence: experimental ; unknown

Mature lja-miR395-3p

• Accession: MIMAT0043943
• Description: Lotus japonicus lja-miR395-3p mature miRNA
• Sequence: 59 - AAUGAACUGUUGAGGGGAACUCUAG - 83
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256