Stem-loop lja-MIR11151

Accession

MI0035923

Description

Lotus japonicus lja-MIR11151 precursor miRNA

Sequence

1679 reads, 115.0 reads per million, 9 experiments

uucuccgucaauucaauUCUGACACUCACGAAUUACUCacguaaacuucucaauuguagaagaaguuuaCGUGAGUAAUUCCUGAGUGUcagaauugacuaugagaa
.((((.......((((((((((((((((.((((((((((((((((((((((.......).))))))))))))))))))))).))))))))))))))))....)))).

Structure

u    cgucaau                C                     - aa 
 ucuc       ucaauUCUGACACUCA GAAUUACUCacguaaacuucu c  u
 ||||       |||||||||||||||| ||||||||||||||||||||| |  u
 agag       aguuaagacUGUGAGU CUUAAUGAGUGCauuugaaga g  g
a    ---uauc                C                     a au 

Annotation confidence Low

Genome context

Chr2: 20165275-20165381 [-]

Mature lja-miR11151-5p

• Accession: MIMAT0054713
• Description: Lotus japonicus lja-miR11151-5p mature miRNA
• Sequence: 18 - UCUGACACUCACGAAUUACUC - 38
• Evidence: experimental ; unknown

Mature lja-miR11151-3p

• Accession: MIMAT0043945
• Description: Lotus japonicus lja-miR11151-3p mature miRNA
• Sequence: 70 - CGUGAGUAAUUCCUGAGUGU - 89
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256